Package List
- APScheduler-3.3.1 In-process task scheduler with Cron-like capabilities
- Babel-2.4.0 Internationalization utilities
- CNVkit-0.8.5 Copy number variation toolkit for high-throughput sequencing.
- ConfigArgParse-0.11.0 A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.
- Cycler-0.10.0 Composable style cycles
- Cython-0.25.2 The Cython compiler for writing C extensions for the Python language.
- Flask-0.12.1 A simple framework for building complex web applications.
- Flask-Bootstrap-3.3.7.1 An extension that includes Bootstrap in your project, without any boilerplate code.
- Flask-Debug-0.4.3 Shows reflection/configuration to aid the development of Flask applications.
- Flask-Migrate-2.0.3 SQLAlchemy database migrations for Flask applications using Alembic
- Flask-SQLAlchemy-2.2 Adds SQLAlchemy support to your Flask application
- Flask-Script-2.0.5 Scripting support for Flask
- Flask-WTF-0.14.2 Simple integration of Flask and WTForms.
- GitPython-2.1.3 Python Git Library
- HTSeq-0.7.2 A framework to process and analyze data from high-throughput sequencing (HTS) assays
- ImmuneDB-0.19.0 A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
- Jinja2-2.9.6 A small but fast and easy to use stand-alone template engine written in pure python.
- Mako-1.0.6 A super-fast templating language that borrows the best ideas from the existing templating languages.
- Markdown-2.6.8 Python implementation of Markdown.
- MySQL-python-1.2.5 Python interface to MySQL
- Nuitka-0.5.25 Python compiler with full language support and CPython compatibility
- PrettyTable-0.7.2 A simple Python library for easily displaying tabular data in a visually appealing ASCII table format.
- PyClone 0.12.9
- PyDP 0.2.2
- PyInstaller-3.2.1 PyInstaller bundles a Python application and all its dependencies into a single package.
- PyMySQL-0.7.10 Pure Python MySQL Driver
- PyVCF-0.6.8 Variant Call Format (VCF) parser for Python
- PyYAML-3.12 YAML parser and emitter for Python
- Pygments-2.2.0 Pygments is a syntax highlighting package written in Python.
- SQLAlchemy-1.1.9 Database Abstraction Library
- Theano-0.9.0 Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs.
- WTForms-2.1 A flexible forms validation and rendering library for Python web development.
- alnvu-0.1.0 Reformat and condense multiple sequence alignments to highlight variability
- ansible-2.2.1.0 Radically simple IT automation
- appdirs-1.4.3 A small Python module for determining appropriate platform-specific dirs, e.g. a “user data dir”.
- argparse-1.4.0 Python command-line parsing library
- astroid-1.4.9 A abstract syntax tree for Python with inference support.
- awscli-1.11.73 Universal Command Line Environment for AWS.
- backports.shutil_get_terminal_size-1.0.0 A backport of the get_terminal_size function from Python 3.3’s shutil.
- bcbio-gff-0.6.4 Read and write Generic Feature Format (GFF) with Biopython integration.
- beautifulsoup4-4.5.3 Screen-scraping library
- biopython-1.68 Freely available tools for computational molecular biology.
- bitstring-3.1.5 Simple construction, analysis and modification of binary data.
- bokeh-0.12.5 Interactive plots and applications in the browser from Python
- boto3-1.4.4 The AWS SDK for Python
- brewer2mpl-1.4.1 Connect colorbrewer2.org color maps to Python and matplotlib
- certifi-2017.1.23 Python package for providing Mozilla’s CA Bundle.
- cliff-2.5.0 Command Line Interface Formulation Framework
- cmd2-0.7.0 cmd2 - a tool for building interactive command line applications in Python
- cpv-0.46 combine p-values
- cruzdb-0.5.6 Interface to UCSC genomic databases.
Also allows things like up/downstream/k-nearest-neighbor queries and mirroring
of tables to local sqlite databases
- cryptography-1.8.1 cryptography is a package which provides cryptographic recipes and primitives to Python developers.
- cutadapt-1.13 trim adapters from high-throughput sequencing reads
- darkslide-2.3.3 Lightweight markup language-based html5 slideshow generator. Forked from Landslide.
- deap-1.0.2 Distributed Evolutionary Algorithms in Python
- debtcollector-1.13.0 A collection of Python deprecation patterns and strategies that help you collect your technical debt in a non-destructive manner.
- decorator-4.0.11 Better living through Python with decorators
- deepTools-2.5.0.1 Useful tools for exploring deep sequencing data
- deprecation-1.0 A library to handle automated deprecations
- docutils-0.13.1 Docutils – Python Documentation Utilities
- drmaa-0.7.7 a python DRMAA library
- easygui-0.98.1 EasyGUI is a module for very simple, very easy GUI programming in Python. EasyGUI is different from other GUI generators in that EasyGUI is NOT event-driven. Instead, all GUI interactions are invoked by simple function calls.
- ecdsa-0.13 ECDSA cryptographic signature library (pure python)
- enum34-1.1.6 Python 3.4 Enum backported to 3.3, 3.2, 3.1, 2.7, 2.6, 2.5, and 2.4
- fasteners-0.14.1 A python package that provides useful locks.
- flask-appconfig-0.11.1 Configures Flask applications in a canonical way. Also auto-configures Heroku. Aims to standardize configuration.
- flask-nav-0.6 Easily create navigation for Flask applications.
- freezer-4.0.0 The OpenStack Backup Restore and Disaster Recovery as a Service Platform
- funcsigs-1.0.2 Python function signatures from PEP362 for Python 2.6, 2.7 and 3.2+
- functools32-3.2.3-2 Backport of the functools module from Python 3.2.3 for use on 2.7 and PyPy.
- futures-3.0.5 Backport of the concurrent.futures package from Python 3
- gitdb2-2.0.0 Git Object Database
- google-1.9.3 Python bindings to the Google search engine.
- h5py-2.7.0 Read and write HDF5 files from Python
- html5lib-0.999999999 HTML parser based on the WHATWG HTML specification
- ipython_genutils-0.2.0 Vestigial utilities from IPython
- iso8601-0.1.11 Simple module to parse ISO 8601 dates
- jellyfish-0.5.6 a library for doing approximate and phonetic matching of strings.
- keystoneauth1-2.19.0 Authentication Library for OpenStack Identity
- ldap3-2.2.2 A strictly RFC 4510 conforming LDAP V3 pure Python client library
- liac-arff-2.1.0 A module for read and write ARFF files in Python.
- lockfile-0.12.2 Platform-independent file locking module
- lxml-3.7.3 Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API.
- matplotlib-2.0.0 Python plotting package
- messytables-0.15.2 Parse messy tabular data in various formats
- mincemeat-0.1.4 UNKNOWN
- misopy-0.5.3 Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq
- mock-2.0.0 Rolling backport of unittest.mock for all Pythons
- monotonic-1.3 An implementation of time.monotonic() for Python 2 & < 3.3
- mpi4py-2.0.0 Python bindings for MPI
- msgpack-python-0.4.8 MessagePack (de)serializer.
- ndg-httpsclient-0.4.2 Provides enhanced HTTPS support for httplib and urllib2 using PyOpenSSL
- netCDF4-1.2.7 Provides an object-oriented python interface to the netCDF version 4 library.
- netaddr-0.7.19 A network address manipulation library for Python
- netifaces-0.10.5 Portable network interface information.
- nose-1.3.7 nose extends unittest to make testing easier
- npyscreen-4.10.5 Writing user interfaces without all that ugly mucking about in hyperspace
- numpy-1.12.1 NumPy: array processing for numbers, strings, records, and objects.
- oauth-1.0.1 Library for OAuth version 1.0a.
- openstacksdk-0.9.14 An SDK for building applications to work with OpenStack
- os-client-config-1.26.0 OpenStack Client Configuation Library
- osc-lib-1.3.0 OpenStackClient Library
- oslo.concurrency-3.20.0 Oslo Concurrency library
- oslo.config-3.24.0 Oslo Configuration API
- oslo.context-2.13.0 Oslo Context library
- oslo.i18n-3.15.0 Oslo i18n library
- oslo.log-3.23.0 oslo.log library
- oslo.serialization-2.18.0 Oslo Serialization library
- oslo.utils-3.25.0 Oslo Utility library
- packaging-16.8 Core utilities for Python packages
- pandas-0.19.2 Powerful data structures for data analysis, time series, and statistics
- paramiko-2.1.2 SSH2 protocol library
- pathlib2-2.2.1 Object-oriented filesystem paths
- paycheck-1.0.2 A Python QuickCheck implementation
- pbr-2.0.0 Python Build Reasonableness
- pep8-1.7.0 Python style guide checker
- pickleshare-0.7.4 Tiny ‘shelve’-like database with concurrency support
- pip-9.0.1 The PyPA recommended tool for installing Python packages.
- positional-1.1.1 Library to enforce positional or key-word arguments (deprecated/unmaintained)
- prompt_toolkit-1.0.14 Library for building powerful interactive command lines in Python
- psutil-5.2.1 Cross-platform lib for process and system monitoring in Python.
- psycopg2-2.7.1 psycopg2 - Python-PostgreSQL Database Adapter
- pyBigWig-0.3.4 A package for accessing bigWig files using libBigWig
- pyOpenSSL-16.2.0 Python wrapper module around the OpenSSL library
- pyasn1-0.2.3 ASN.1 types and codecs
- pyastro-1.1 Astronomical Library
- pycrypto-2.6.1 Cryptographic modules for Python.
- pycurl-7.43.0 PycURL – A Python Interface To The cURL library
- pyensembl-1.1.0 Python interface to ensembl reference genome metadata
- pygithub3-0.5.1 Python wrapper for the github v3 api
- pyinotify-0.9.6 Linux filesystem events monitoring
- pymongo-3.4.0 Python driver for MongoDB http://www.mongodb.org
- pymssql-2.1.3 DB-API interface to Microsoft SQL Server for Python. (new Cython-based version)
- pypandoc-1.3.3 Thin wrapper for pandoc.
- pyparsing-2.2.0 Python parsing module
- pysam-0.10.0 pysam
- python-cinderclient-2.0.1 OpenStack Block Storage API Client Library
- python-dateutil-2.6.0 Extensions to the standard Python datetime module
- python-freezerclient-1.3.0 OpenStack Disaster Recovery API Client Library
- python-glanceclient-2.6.0 OpenStack Image API Client Library
- python-keystoneclient-3.10.0 Client Library for OpenStack Identity
- python-memcached-1.58 Pure python memcached client
- python-novaclient-8.0.0 Client library for OpenStack Compute API
- python-openstackclient-3.9.0 OpenStack Command-line Client
- python-pam-1.8.2 Python PAM module using ctypes, py3/py2
- python-swiftclient-3.3.0 OpenStack Object Storage API Client Library
- pytz-2017.2 World timezone definitions, modern and historical
- qiime-1.9.1 Quantitative Insights Into Microbial Ecology
- qrcode-5.3 QR Code image generator
- requests-2.13.0 Python HTTP for Humans.
- requestsexceptions-1.2.0 Import exceptions from potentially bundled packages in requests.
- rfc3986-0.4.1 Validating URI References per RFC 3986
- rpy2-2.8.5 Python interface to the R language (embedded R)
- scikit-learn-0.18.1 A set of python modules for machine learning and data mining
- scipy-0.19.0 SciPy: Scientific Library for Python
- seqmagick-0.6.1 Tools for converting and modifying sequence files from the command-line
- setuptools-34.3.3 Easily download, build, install, upgrade, and uninstall Python packages
- shove-0.6.6 Generic dictionaryish object storage frontend
- simplegeneric-0.8.1 Simple generic functions (similar to Python’s own len(), pickle.dump(), etc.)
- simplejson-3.10.0 Simple, fast, extensible JSON encoder/decoder for Python
- six-1.10.0 Python 2 and 3 compatibility utilities
- slurm-pipeline-1.1.1 A Python class for scheduling SLURM jobs
- smmap2-2.0.1 A pure python implementation of a sliding window memory map manager
- stevedore-1.21.0 Manage dynamic plugins for Python applications
- toil-3.7.0a1.dev384 Pipeline management software for clusters.
- toolshed-0.4.6 Tools for data
- traitlets-4.3.2 Traitlets Python config system
- twobitreader-3.1.4 A fast python package for reading .2bit files (used by the UCSC genome browser)
- tzlocal-1.3 tzinfo object for the local timezone
- unicodecsv-0.14.1 Python2’s stdlib csv module is nice, but it doesn’t support unicode. This module is a drop-in replacement which does.
- uritemplate-3.0.0 URI templates
- urwid-1.3.1 A full-featured console (xterm et al.) user interface library
- vctools-0.1.6.1 A set of tools for interacting with the VMware vCloud API, whether on vCloud Air or locally installed.
- virtualenv-15.1.0 Virtual Python Environment builder
- warlock-1.3.0 Python object model built on JSON schema and JSON patch.
- watchdog-0.8.3 Filesystem events monitoring
- wrapt-1.10.10 Module for decorators, wrappers and monkey patching.