Code Examples and Templates

Updated: November 12, 2019

Edit this Page via GitHub       Comment by Filing an Issue      Have Questions? Ask them here.

There are a variety of creators around FRed Hutch and beyond who have provided code examples or templates beyond what is described in our Resource Library. These include resources like template GitHub repositories (learn more about using those here) you can clone and use directly, to examples of code that users have used to perform tasks on Fred Hutch infrastructure that you can copy and tailor to your own use. If you know of other resources the community might benefit from that are not linked to here, please file an issue in our GitHub repo with the link and some context about it (what is it? why should people be interested in it?). Or if you would like to contribute either a Resource Library entry or link your own template/example repo, you can also file an issue in our GitHub repo or add it yourself!!

Fred Hutch Templates

These are links to repositories intended to be cloned locally and used as a starting point for your own work.

https://github.com/FredHutch/wiki-code-templates

https://github.com/FredHutch/scharpTemplates

https://github.com/FredHutch/shiny-app-template

Templates from other organizations

Similar but from other organizations.

Cookiecutter https://cookiecutter.readthedocs.io/en/latest/readme.html

Shablona https://github.com/uwescience/shablona

Fred Hutch Code Examples

These repositories contain a variety of Fred Hutch curated example code, chunks, examples and general documentation you might peruse and learn from.

https://github.com/FredHutch/wiki-code-examples

https://github.com/FredHutch/slurm-examples

https://github.com/FredHutch/batch_pipeline

https://github.com/FredHutch/scicomp_flask_examples

https://github.com/FredHutch/community_groups/blob/master/python_coding.md#examples

https://github.com/FredHutch/scrnaseq-workflows

https://github.com/FredHutch/reproducible-workflows

Updated: November 12, 2019

Edit this Page via GitHub       Comment by Filing an Issue      Have Questions? Ask them here.