This section describes how to get access and credentials to computing systems on campus and in the cloud.
A HutchNet ID is the standard login name and password you receive when you start working at the Hutch or are an official affiliate. It is also called Network login or Active Directory credentials. You can use it to login to most resources at the Center (Desktop Computer, Employee Self Service, VPN, Webmail) as well to Scientific Computing systems such as
ssh rhino), which is the login system to large scale cluster computing resources like
If one of your collaborators requires access to the Fred Hutch network you can submit a non-employee action form. Non-employees is a generic administrative term for affiliates, students, contractors, etc.
Please see the Service Desk site on CenterNet for more information about HutchNet ID including password rotation, etc.
Accessing Slurm Clusters
To use Slurm clusters like gizmo you also need to have your HutchNet ID associated with a PI account. Errors similar to “Invalid account or account/partition” typically indicate that this association hasn’t been set up. Contact Scientific Computing to have this corrected.
The Fred Hutch GitHub organization offers free access to public and private git repositories to all Fred Hutch staff and collaborators. If you are a Fred Hutch employee working with source code and don’t have a github.com account yet, please create one and email
scicomp: “Please add my GitHub user id
xyz to organization github.com/FredHutch”. Once you are a member of the organization you can create repositories, teams and invite external collaborators to share and edit code.
Note: www.github.com/FredHutch is the only officially approved cloud based source code system at Fred Hutch. It has security features that are otherwise not available via other systems.
Once you are a member of the organization you can create repositories and invite external collaborators to share and edit code. If you plan to work collaboratively with a group of people, we recommend you learn about roles available to GitHub users, and consider creating a team to control permissions and access (members of the Fred Hutch GitHub organization are allowed to create teams). Please see this GitHub help article for more information.
A GitHub account is different from other accounts in that your account is independent from your employment at the Hutch. If you end your employment with the Hutch, you will be removed from the Fred Hutch organization on GitHub. If you have continuing collaborations, your colleagues still working at the Hutch can add you as an external collaborator to their GitHub repositories.
We have a Code Management primer that provides more information about git and GitHub in general and specifically here at the Fred Hutch.
Guidance for Managing Credentials and Passwords
One issue to note when using GitHub to do version control in your code is that it can be very straightforward to inadvertently push content to GitHub that includes things such as API tokens, usernames and passwords, or even your AWS credentials themselves. Please take care to structure your code in such a way that these “secrets” or anything you perceive to be private information (see our Security page for more information about what this might be) are loaded from an external file or environment variables that themselves are not sent to GitHub!!
Amazon Web Services (AWS)
You can obtain Amazon Web Services (AWS) credentials to make use of the Center’s AWS account. By default this will give you access to your lab’s S3 bucket, but you can request permission (by emailing
scicomp@) to use other services such as AWS Batch. AWS credentials are designated per user, so any Fred Hutch employee should obtain their own credentials.
Note: Beyond precautions taken to protect any other credentials listed here, take care to ensure AWS credentials are never shared with or disclosed to any other user, directly (e.g., by email) or indirectly (e.g., by including them in code and sharing the code/committing to GitHub). If you need credentials for an external collaborator, or if you are having a permissions issue, please email
scicompto request support from Scientific Computing.
There are two ways to get AWS credentials. Which one to use depends on how you will use AWS, either via the command line on
gizmo or via graphical programs on your local computer such as via Cyberduck or Mountain Duck.
Command Line (Rhino/Gizmo) Instructions
A working HutchNet ID is all you need to login to
rhino. We provide basic references for bash/linux computing here, as well as a resource library page for advanced ssh configurations at Fred Hutch. These resources will provide the necessary information for how to connect to
gizmo resources to be able to run these instructions. If you have questions about how to access
rhino to perform these steps please email
Some users will see an error message that their home directory was not found. This can happen if you are in a newly created department or in one that is typically not working with SciComp resources. Please email
scicomp to have your home directory created.
Then run the
This will prompt you for your HutchNet password, which will not echo to the screen when you type it in. It will then write out your credentials to files, which programs that use AWS will look for.
awscreds will report exactly what it’s doing and where it has written your credentials.
awscreds includes some options that allow you to customize its behavior. You can see this options by typing the command
One important option is the
--force flag, which tells
awscreds that it can overwrite
your existing credentials. This may be needed
if your credentials are changed, and can be invoked as follows:
Testing Your Credentials
To test your credentials to ensure that you have the correct permissions to your PI bucket, execute the following to copy a file from our shared reference data bucket to your local system, and then copy that file to your PI bucket.
module load awscli aws s3 cp s3://fh-ctr-public-reference-data/wiki_example_data/iris.csv .
In the commands below, replace
f is the PI’s first name initial) with the name associated to your PI bucket:
aws s3 cp iris.csv s3://fh-pi-lastname-f/iris.csv
If you notice any errors with this, please email the commands you executed and the output to
scicomp for assistance with your AWS S3 credentials.
Once you have confirmed your credentials, remember to remove the test file:
aws s3 rm s3://fh-pi-lastname-f/iris.csv
See more about accessing AWS S3 via the command line here.
Open a web browser and navigate to the Toolbox. This page is only accessible within the Hutch network. When prompted, enter your HutchNet ID and password. Your browser will display your access key and secret key. You can use these with graphical applications such Cyberduck, Mountain Duck, or Motuz. See the more about how to use Cyberduck or Mountain Duck to connect to AWS S3 here.
Updated: September 17, 2020Edit this Page via GitHub Comment by Filing an Issue Have Questions? Ask them here.