Known Issues
Package List
APScheduler-3.6.1 In-process task scheduler with Cron-like capabilities
AnyQt-0.0.10 PyQt4/PyQt5 compatibility layer.
Babel-2.7.0 Internationalization utilities
Brotli-1.0.7 Python bindings for the Brotli compression library
CacheControl-0.12.5 httplib2 caching for requests
ConfigArgParse-0.14.0 A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.
Cython-0.29.13 The Cython compiler for writing C extensions for the Python language.
DCA-0.2.3 Count autoencoder for scRNA-seq denoising
DataShape-0.5.2 A data description language.
DendroPy-4.4.0 A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
Deprecated-1.2.6 Python @deprecated decorator to deprecate old python classes, functions or methods.
Django-2.2.4 A high-level Python Web framework that encourages rapid development and clean, pragmatic design.
Flask-1.1.1 A simple framework for building complex web applications.
Flask-Bootstrap-3.3.7.1 An extension that includes Bootstrap in your project, without any boilerplate code.
Flask-Cors-3.0.8 A Flask extension adding a decorator for CORS support
Flask-Debug-0.4.3 Shows reflection/configuration to aid the development of Flask applications.
Flask-Migrate-2.5.2 SQLAlchemy database migrations for Flask applications using Alembic
Flask-SQLAlchemy-2.4.0 Adds SQLAlchemy support to your Flask application.
Flask-Script-2.0.6 Scripting support for Flask
Flask-WTF-0.14.2 Simple integration of Flask and WTForms.
Genshi-0.7.3 A toolkit for generation of output for the web
GitPython-2.1.13 Python Git Library
HTSeq-0.11.2 A framework to process and analyze data from high-throughput sequencing (HTS) assays
HeapDict-1.0.0 a heap with decrease-key and increase-key operations
Jinja2-2.10.1 A very fast and expressive template engine.
Kivy-1.11.1 A software library for rapid development of hardware-accelerated multitouch applications.
Mako-1.1.0 A super-fast templating language that borrows the best ideas from the existing templating languages.
Markdown-3.1.1 Python implementation of Markdown.
MarkupSafe-1.1.1 Safely add untrusted strings to HTML/XML markup.
MonkeyType-19.5.0 Generating type annotations from sampled production types
Morfessor-2.0.6 Morfessor
NanoComp-1.9.0 Comparing runs of Oxford Nanopore sequencing data and alignments
NanoFilt-2.5.0 Filtering and trimming of Oxford Nanopore Sequencing data
NanoLyse-1.1.0 Removing reads mapping to the lambda genome
NanoPlot-1.26.3 Plotting suite for Oxford Nanopore sequencing data and alignments
NanoStat-1.1.2 Calculate statistics for Oxford Nanopore sequencing data and alignments
Nuitka-0.6.5 Python compiler with full language support and CPython compatibility
Parsley-1.3 Parsing and pattern matching made easy.
Paste-3.1.0 Tools for using a Web Server Gateway Interface stack
PasteDeploy-2.0.1 Load, configure, and compose WSGI applications and servers
Pillow-6.1.0 Python Imaging Library (Fork)
PrettyTable-0.7.2 A simple Python library for easily displaying tabular data in a visually appealing ASCII table format.
PyChef-0.3.0 Python implementation of a Chef API client.
PyClone 0.13.1
PyDP-0.2.4 Data Processing Lib
PyGithub-1.43.8 Use the full Github API v3
PyGreSQL-5.1 Python PostgreSQL Interfaces
PyICU-2.3.1 Python extension wrapping the ICU C++ API
PyInstaller-3.5 PyInstaller bundles a Python application and all its dependencies into a single package.
PyJWT-1.7.1 JSON Web Token implementation in Python
PyMySQL-0.9.3 Pure Python MySQL Driver
PyNaCl-1.2.1 Python binding to the Networking and Cryptography (NaCl) library
PyOpenGL-3.1.0 Standard OpenGL bindings for Python
PyQt5-5.13.0 Python bindings for the Qt cross platform application toolkit
PyQt5-sip-4.19.18 The sip module support for PyQt5
PyVCF-0.6.8 Variant Call Format (VCF) parser for Python
PyWavelets-1.0.3 PyWavelets, wavelet transform module
PyYAML-5.1.2 YAML parser and emitter for Python
Pygments-2.4.2 Pygments is a syntax highlighting package written in Python.
Pyro4-4.76 distributed object middleware for Python (RPC)
QtPy-1.9.0 Provides an abstraction layer on top of the various Qt bindings (PyQt5, PyQt4 and PySide) and additional custom QWidgets.
Routes-2.4.1 Routing Recognition and Generation Tools
SIP-4.19.8 A Python bindings generator for C/C++ libraries
SPARQLWrapper-1.8.4 SPARQL Endpoint interface to Python
SQLAlchemy-1.3.6 Database Abstraction Library
SecretStorage-3.1.1 Python bindings to FreeDesktop.org Secret Service API
Send2Trash-1.5.0 Send file to trash natively under Mac OS X, Windows and Linux.
Sphinx-2.1.2 Python documentation generator
Tempita-0.5.2 A very small text templating language
Theano-1.0.4 Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs.
Twisted-19.2.1 An asynchronous networking framework written in Python
WTForms-2.2.1 A flexible forms validation and rendering library for Python web development.
WebOb-1.8.5 WSGI request and response object
Werkzeug-0.15.5 The comprehensive WSGI web application library.
XlsxWriter-1.1.8 A Python module for creating Excel XLSX files.
ZConfig-3.5.0 Structured Configuration Library
absl-py-0.7.1 Abseil Python Common Libraries, see https://github.com/abseil/abseil-py.
abstract_rendering-0.5.1 Rendering as a binning process
adal-1.2.2 The ADAL for Python library makes it easy for python application to authenticate to Azure Active Directory (AAD) in order to access AAD protected web resources.
aenum-2.2.1 Advanced Enumerations (compatible with Python’s stdlib Enum), NamedTuples, and NamedConstants
agfusion-1.251 Python package to annotate and visualize gene fusions.
aiodns-2.0.0 Simple DNS resolver for asyncio
airr-1.2.1 AIRR Community Data Representation Standard reference library for antibody and TCR sequencing data.
alabaster-0.7.12 A configurable sidebar-enabled Sphinx theme
alembic-1.0.11 A database migration tool for SQLAlchemy.
altair-3.1.0 Altair: A declarative statistical visualization library for Python.
altgraph-0.16.1 Python graph (network) package
amqp-2.5.0 Low-level AMQP client for Python (fork of amqplib).
anndata-0.6.22.post1 Annotated Data.
annoy-1.16.0 Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk.
ansible-2.8.4 Radically simple IT automation
apipkg-1.5 apipkg: namespace control and lazy-import mechanism
apiwrapper-0.1.8 Simple API Wrapper
appdirs-1.4.3 A small Python module for determining appropriate platform-specific dirs, e.g. a “user data dir”.
argcomplete-1.10.0 Bash tab completion for argparse
argh-0.26.2 An unobtrusive argparse wrapper with natural syntax
argon2-cffi-19.1.0 The secure Argon2 password hashing algorithm.
asciitree-0.3.3 Draws ASCII trees.
asn1crypto-0.24.0 Fast ASN.1 parser and serializer with definitions for private keys, public keys, certificates, CRL, OCSP, CMS, PKCS#3, PKCS#7, PKCS#8, PKCS#12, PKCS#5, X.509 and TSP
astor-0.8.0 Read/rewrite/write Python ASTs
astroid-2.2.5 An abstract syntax tree for Python with inference support.
astropy-3.2.1 Community-developed python astronomy tools
async_generator-1.10 Async generators and context managers for Python 3.5+
async_timeout-3.0.1 Timeout context manager for asyncio programs
attrs-19.1.0 Classes Without Boilerplate
autopep8-1.4.4 A tool that automatically formats Python code to conform to the PEP 8 style guide
awscli-1.16.211 Universal Command Line Environment for AWS.
azure-4.0.0 Microsoft Azure Client Libraries for Python
azure-common-1.1.23 Microsoft Azure Client Library for Python (Common)
backcall-0.1.0 Specifications for callback functions passed in to an API
backports.csv-1.0.7 Backport of Python 3 csv module
backports.functools_lru_cache-1.5 Backport of functools.lru_cache
backports.shutil_get_terminal_size-1.0.0 A backport of the get_terminal_size function from Python 3.3’s shutil.
backports.shutil_which-3.5.2 Backport of shutil.which from Python 3.3
backports.weakref-1.0.post1 Backport of new features in Python’s weakref module
bagit-1.7.0 Create and validate BagIt packages
bandit-1.6.2 Security oriented static analyser for python code.
bbknn-1.3.5 Batch balanced KNN
bcbio-gff-0.6.6 Read and write Generic Feature Format (GFF) with Biopython integration.
bcrypt-3.1.4 Modern password hashing for your software and your servers
bd2k-python-lib-1.14a1.dev48 The BD2K Python module kitchen sink
beautifulsoup4-4.8.0 Screen-scraping library
betamax-0.8.1 A VCR imitation for python-requests
billiard-3.6.0.0 Python multiprocessing fork with improvements and bugfixes
biolib-0.0.46 Package for common tasks in bioinformatic.
biopython-1.74 Freely available tools for computational molecular biology.
bitarray-1.0.1 efficient arrays of booleans – C extension
bitstring-3.1.5 Simple construction, analysis and modification of binary data.
black-19.3b0 The uncompromising code formatter.
blaze-0.10.1 Blaze
bleach-3.1.0 An easy safelist-based HTML-sanitizing tool.
blessings-1.7 A thin, practical wrapper around terminal coloring, styling, and positioning
blinker-1.4 Fast, simple object-to-object and broadcast signaling
blist-1.3.6 a list-like type with better asymptotic performance and similar performance on small lists
blosc-1.8.1 Blosc data compressor
bokeh-1.3.2 Interactive plots and applications in the browser from Python
boltons-19.1.0 When they’re not builtins, they’re boltons.
boto3-1.9.201 The AWS SDK for Python
botocore-1.12.201 Low-level, data-driven core of boto 3.
bpython-0.18 Fancy Interface to the Python Interpreter
brotlipy-0.7.0 Python binding to the Brotli library
burrito-0.9.1 Framework for wrapping and controlling command-line applications.
burrito-fillings-0.1.1 burrito-fillings: burrito application controllers for bioinformatics
bz2file-0.98 Read and write bzip2-compressed files.
cached-property-1.5.1 A decorator for caching properties in classes.
capturer-2.4 Easily capture stdout/stderr of the current process and subprocesses
cassandra-driver-3.18.0 Python driver for Cassandra
cchardet-2.1.4 cChardet is high speed universal character encoding detector.
celery-4.3.0 Distributed Task Queue.
certifi-2018.8.13 Python package for providing Mozilla’s CA Bundle.
cffi-1.11.5 Foreign Function Interface for Python calling C code.
cftime-1.0.3.4 Time-handling functionality from netcdf4-python
changeo-0.4.6 A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
chardet-3.0.4 Universal encoding detector for Python 2 and 3
click-7.0 Composable command line interface toolkit
cliff-2.15.0 Command Line Interface Formulation Framework
cloudpickle-1.2.1 Extended pickling support for Python objects
clyent-1.2.1 Command line client Library for windwos and posix
cmarkgfm-0.4.2 Minimal bindings to GitHub’s fork of cmark
cmd2-0.9.15 cmd2 - quickly build feature-rich and user-friendly interactive command line applications in Python
codecov-2.0.15 Hosted coverage reports for Github, Bitbucket and Gitlab
collective.checkdocs-0.2 Distutils command to view and validate restructured text in package’s long_description
colorama-0.4.1 Cross-platform colored terminal text.
coloredlogs-10.0 Colored terminal output for Python’s logging module
configobj-5.0.6 Config file reading, writing and validation.
configparser-3.7.4 Updated configparser from Python 3.7 for Python 2.6+.
constantly-15.1.0 Symbolic constants in Python
coverage-4.5.4 Code coverage measurement for Python
coveralls-1.8.2 Show coverage stats online via coveralls.io
cryptography-2.3.1 cryptography is a package which provides cryptographic recipes and primitives to Python developers.
cssselect-1.0.3 cssselect parses CSS3 Selectors and translates them to XPath 1.0
curtsies-0.3.0 Curses-like terminal wrapper, with colored strings!
cutadapt-2.4 trim adapters from high-throughput sequencing reads
cwl-0.0.1 Common Workflow Language Command Line Interface
cwlref-runner-1.0 Common workflow language reference implementation
cwltool-1.0.20190621234233 Common workflow language reference implementation
cx_Freeze-5.1.1 create standalone executables from Python scripts
cytoolz-0.10.0 Cython implementation of Toolz: High performance functional utilities
daemonize-2.5.0 Library to enable your code run as a daemon process on Unix-like systems.
daiquiri-1.5.0 Library to configure Python logging easily
darkslide-4.0.1 Lightweight markup language-based html5 slideshow generator. Forked from Landslide.
dask-2.2.0 Parallel PyData with Task Scheduling
datacache-1.1.5 Helpers for transparently downloading datasets
dataclasses-0.6 A backport of the dataclasses module for Python 3.6
datrie-0.8 Super-fast, efficiently stored Trie for Python.
dbf-0.98.2 Pure python package for reading/writing dBase, FoxPro, and Visual FoxPro .dbf files (including memos)
ddt-1.2.1 Data-Driven/Decorated Tests
deap-1.2.2 Distributed Evolutionary Algorithms in Python
debtcollector-1.21.0 A collection of Python deprecation patterns and strategies that help you collect your technical debt in a non-destructive manner.
decorator-4.3.0 Decorators for Humans
deepTools-3.3.0 Useful tools for exploring deep sequencing data
defusedxml-0.6.0 XML bomb protection for Python stdlib modules
deprecation-2.0.6 A library to handle automated deprecations
dill-0.3.0 serialize all of python
distlib-0.2.9.post0 Distribution utilities
distributed-2.2.0 Distributed scheduler for Dask
django-configurations-2.1 A helper for organizing Django settings.
dnaio-0.3 Read FASTA and FASTQ files efficiently
dnspython-1.16.0 DNS toolkit
doc8-0.8.0 Style checker for Sphinx (or other) RST documentation
docopt-0.6.2 Pythonic argument parser, that will make you smile
docutils-0.15.2 Docutils – Python Documentation Utilities
docutils-stubs-0.0.21 PEP 561 type stubs for docutils
dogpile.cache-0.7.1 A caching front-end based on the Dogpile lock.
dominate-2.4.0 Dominate is a Python library for creating and manipulating HTML documents using an elegant DOM API.
dpcontracts-0.6.0 A simple implementation of contracts for Python.
drmaa-0.7.9 a python DRMAA library
dulwich-0.19.11 Python Git Library
easygui-0.98.1 EasyGUI is a module for very simple, very easy GUI programming in Python. EasyGUI is different from other GUI generators in that EasyGUI is NOT event-driven. Instead, all GUI interactions are invoked by simple function calls.
ecdsa-0.13 ECDSA cryptographic signature library (pure python)
elasticsearch-7.0.2 Python client for Elasticsearch
elementpath-1.2.0 XPath 1.0/2.0 parsers and selectors for ElementTree and lxml
entrypoints-0.3 Discover and load entry points from installed packages.
ephem-3.7.6.0 Compute positions of the planets and stars
epydoc-3.0.1 Edward Loper’s API Documentation Generation Tool
eventlet-0.25.0 Highly concurrent networking library
execnet-1.6.1 execnet: rapid multi-Python deployment
extras-1.0.0 Useful extra bits for Python - things that shold be in the standard library
fastcache-1.1.0 C implementation of Python 3 functools.lru_cache
fasteners-0.15 A python package that provides useful locks.
fastnumbers-2.2.1 Super-fast and clean conversions to numbers.
feather-format-0.4.0 Simple wrapper library to the Apache Arrow-based Feather File Format
fields-5.0.0 Container class boilerplate killer.
filelock-3.0.12 A platform independent file lock.
findspark-1.3.0 Find pyspark to make it importable.
first-2.0.2 Return the first true value of an iterable.
fixtures-3.0.0 Fixtures, reusable state for writing clean tests and more.
flake8-3.7.8 the modular source code checker: pep8, pyflakes and co
flake8-docstrings-1.3.1 Extension for flake8 which uses pydocstyle to check docstrings
flake8-import-order-0.18.1 Flake8 and pylama plugin that checks the ordering of import statements.
flake8-polyfill-1.0.2 Polyfill package for Flake8 plugins
flaky-3.6.0 Plugin for nose or pytest that automatically reruns flaky tests.
flask-appconfig-0.11.1 Configures Flask applications in a canonical way. Also auto-configures Heroku. Aims to standardize configuration.
flask-nav-0.6 Easily create navigation for Flask applications.
flup-1.0.3 Random assortment of WSGI servers (py3)
freezer-7.1.0 The OpenStack Backup Restore and Disaster Recovery as a Service Platform
fsspec-0.4.1 File-system specification
funcsigs-1.0.2 Python function signatures from PEP362 for Python 2.6, 2.7 and 3.2+
future-0.17.1 Clean single-source support for Python 3 and 2
future-fstrings-1.2.0 A backport of fstrings to python<3.6
galaxy-lib-19.5.2 Subset of Galaxy (http://galaxyproject.org/) core code base designed to be used a library.
gast-0.2.2 Python AST that abstracts the underlying Python version
get_version-2.0.6 A version helper in the spirit of versioneer.
gevent-1.4.0 Coroutine-based network library
gitdb2-2.0.5 Git Object Database
gnureadline-8.0.0 The standard Python readline extension statically linked against the GNU readline library.
google-2.0.2 Python bindings to the Google search engine.
google-pasta-0.1.7 pasta is an AST-based Python refactoring library
graphviz-0.11.1 Simple Python interface for Graphviz
greenlet-0.4.15 Lightweight in-process concurrent programming
grpcio-1.22.0 HTTP/2-based RPC framework
gtfparse-1.2.0 GTF Parsing
h5py-2.9.0 Read and write HDF5 files from Python
hacking-1.1.0 OpenStack Hacking Guideline Enforcement
hdmedians-0.13 High-dimensional medians
hiredis-1.0.0 Python wrapper for hiredis
html5lib-1.0.1 HTML parser based on the WHATWG HTML specification
httpie-1.0.2 HTTPie - a CLI, cURL-like tool for humans.
httplib2-0.13.1 A comprehensive HTTP client library.
humanfriendly-4.18 Human friendly output for text interfaces using Python
hunter-3.0.1 Hunter is a flexible code tracing toolkit.
hyperlink-19.0.0 A featureful, immutable, and correct URL for Python.
hyperopt-0.1.2 Distributed Asynchronous Hyperparameter Optimization
hypothesis-4.32.3 A library for property-based testing
idna-2.7 Internationalized Domain Names in Applications (IDNA)
idna_ssl-1.1.0 Patch ssl.match_hostname for Unicode(idna) domains support
imageio-2.5.0 Library for reading and writing a wide range of image, video, scientific, and volumetric data formats.
imagesize-1.1.0 Getting image size from png/jpeg/jpeg2000/gif file
incremental-17.5.0
inflection-0.3.1 A port of Ruby on Rails inflector to Python
ip_associations_python_novaclient_ext-0.2 Adds Rackspace ip_associations support to python-novaclient
ipaddress-1.0.22 IPv4/IPv6 manipulation library
ipdb-0.12.2 IPython-enabled pdb
ipython-7.7.0 IPython: Productive Interactive Computing
ipython_genutils-0.2.0 Vestigial utilities from IPython
iso8601-0.1.12 Simple module to parse ISO 8601 dates
isodate-0.6.0 An ISO 8601 date/time/duration parser and formatter
isort-4.3.21 A Python utility / library to sort Python imports.
itsdangerous-1.1.0 Various helpers to pass data to untrusted environments and back.
jdcal-1.4.1 Julian dates from proleptic Gregorian and Julian calendars.
jedi-0.14.1 An autocompletion tool for Python that can be used for text editors.
jeepney-0.4 Low-level, pure Python DBus protocol wrapper.
jellyfish-0.7.2 a library for doing approximate and phonetic matching of strings.
jmespath-0.9.4 JSON Matching Expressions
joblib-0.12.2 Lightweight pipelining: using Python functions as pipeline jobs.
json2html-1.3.0 JSON to HTML Table Representation
json5-0.8.5 A Python implementation of the JSON5 data format.
jsonpatch-1.24 Apply JSON-Patches (RFC 6902)
jsonpointer-2.0 Identify specific nodes in a JSON document (RFC 6901)
jsonschema-3.0.2 An implementation of JSON Schema validation for Python
jsontableschema-0.10.1 A utility library for working with JSON Table Schema in Python
kazoo-2.6.1 Higher Level Zookeeper Client
keepalive-0.5 urllib keepalive support for python
keyring-19.0.2 Store and access your passwords safely.
keystoneauth1-3.15.0 Authentication Library for OpenStack Identity
kivy-garden-0.1.4 Garden tool for kivy flowers.
kombu-4.6.3 Messaging library for Python.
lark-parser-0.7.2 a modern parsing library
lazr.uri-1.0.3 A self-contained, easily reusable library for parsing, manipulating,
lazy-object-proxy-1.4.1 A fast and thorough lazy object proxy.
ldap3-2.6 A strictly RFC 4510 conforming LDAP V3 pure Python client library
leidenalg-0.7.0 Leiden is a general algorithm for methods of community detection in large networks.
liac-arff-2.3 A module for read and write ARFF files in Python.
librabbitmq-2.0.0 AMQP Client using the rabbitmq-c library.
llvmlite-0.29.0 lightweight wrapper around basic LLVM functionality
locket-0.2.0 File-based locks for Python for Linux and Windows
lockfile-0.12.2 Platform-independent file locking module
logilab-common-1.4.3 collection of low-level Python packages and modules used by Logilab projects
loompy-2.0.17 Work with Loom files for single-cell RNA-seq data
louvain-0.6.1 Louvain is a general algorithm for methods of community detection in large networks.
lxml-4.4.0 Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API.
macholib-1.11 Mach-O header analysis and editing
manhole-1.6.0 Manhole is in-process service that will accept unix domain socket connections and present the
manuel-1.10.1 Manuel lets you build tested documentation.
mccabe-0.6.1 McCabe checker, plugin for flake8
memoized-property-1.0.3 A simple python decorator for defining properties that only run their fget function once
messytables-0.15.2 Parse messy tabular data in various formats
misopy-0.5.4 Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq
mistune-0.8.4 The fastest markdown parser in pure Python
mock-2.0.0 Rolling backport of unittest.mock for all Pythons
monotonic-1.5 An implementation of time.monotonic() for Python 2 & < 3.3
mox3-0.27.0 Mock object framework for Python
mpi4py-3.0.0 Python bindings for MPI
mpld3-0.3 D3 Viewer for Matplotlib
mpmath-1.0.0 Python library for arbitrary-precision floating-point arithmetic
msgpack-python-0.5.6 MessagePack (de)serializer.
msrest-0.6.9 AutoRest swagger generator Python client runtime.
msrestazure-0.6.1 AutoRest swagger generator Python client runtime. Azure-specific module.
multidict-4.5.2 multidict implementation
multipledispatch-0.6.0 Multiple dispatch
munch-2.3.2 A dot-accessible dictionary (a la JavaScript objects)
mypy-0.720 Optional static typing for Python
mypy_extensions-0.4.1 Experimental type system extensions for programs checked with the mypy typechecker.
mypytools-0.1.15 A bundle of tools to make using mypy easier
nanoget-1.8.0 Functions to extract information from Oxford Nanopore sequencing data and alignments.
nanomath-0.23.1 A few simple math function for other Oxford Nanopore processing scripts
nanoplotter-1.10.0 Plotting functions of Oxford Nanopore sequencing data
natsort-6.0.0 Simple yet flexible natural sorting in Python.
nbconvert-5.6.0 Converting Jupyter Notebooks
nbformat-4.4.0 The Jupyter Notebook format
nbval-0.9.2 A py.test plugin to validate Jupyter notebooks
ndg-httpsclient-0.5.1 Provides enhanced HTTPS support for httplib and urllib2 using PyOpenSSL
neo4j-driver-1.7.4 Neo4j Bolt driver for Python
netCDF4-1.5.1.2 Provides an object-oriented python interface to the netCDF version 4 library.
netaddr-0.7.19 A network address manipulation library for Python
netifaces-0.10.7 Portable network interface information.
networkx-2.3 Python package for creating and manipulating graphs and networks
nltk-3.4.4 Natural Language Toolkit
nmslib-1.8.1 Non-Metric Space Library (NMSLIB)
nose-1.3.7 nose extends unittest to make testing easier
nose-exclude-0.5.0 Exclude specific directories from nosetests runs.
nose_warnings_filters-0.1.5 Allow to inject warning filters during nosetest
.
novaclient-auth-secretkey-0.1 Authentication plugin for novaclient enabling API key and secret key
npyscreen-4.10.5 Writing user interfaces without all that ugly mucking about in hyperspace
numba-0.45.1 compiling Python code using LLVM
numcodecs-0.6.3 A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
numexpr-2.6.9 Fast numerical expression evaluator for NumPy
numpy-1.15.0 NumPy is the fundamental package for array computing with Python.
numpydoc-0.9.1 Sphinx extension to support docstrings in Numpy format
oauth-1.0.1 Library for OAuth version 1.0a.
oauthlib-3.0.2 A generic, spec-compliant, thorough implementation of the OAuth request-signing logic
objgraph-3.4.1 Draws Python object reference graphs with graphviz
odo-0.5.0 Data migration utilities
olefile-0.46 Python package to parse, read and write Microsoft OLE2 files (Structured Storage or Compound Document, Microsoft Office)
oncodrivefml-2.2.0 Identify signals of positive selection in somatic mutations
ont-fast5-api-1.4.7 Oxford Nanopore Technologies fast5 API software
opencv_python-4.1.0.25 Wrapper package for OpenCV python bindings.
openpyxl-2.6.2 A Python library to read/write Excel 2010 xlsx/xlsm files
openstackdocstheme-1.31.0 OpenStack Docs Theme
openstacksdk-0.32.0 An SDK for building applications to work with OpenStack
orderedmultidict-1.0.1 Ordered Multivalue Dictionary
os-brick-2.9.1 OpenStack Cinder brick library for managing local volume attaches
os-client-config-1.32.0 OpenStack Client Configuation Library
os-service-types-1.7.0 Python library for consuming OpenStack sevice-types-authority data
os-testr-1.1.0 A testr wrapper to provide functionality for OpenStack projects
os_diskconfig_python_novaclient_ext-0.1.3 Disk Config extension for python-novaclient
os_networksv2_python_novaclient_ext-0.26 Adds rackspace networks support to python-novaclient
os_virtual_interfacesv2_python_novaclient_ext-0.20 Adds Virtual Interfaces support to python-novaclient
osc-lib-1.13.0 OpenStackClient Library
oscpy-0.4.0 A modern and efficient OSC Client/Server implementation
oslo.concurrency-3.29.1 Oslo Concurrency library
oslo.config-6.11.0 Oslo Configuration API
oslo.context-2.22.1 Oslo Context library
oslo.db-5.0.1 Oslo Database library
oslo.i18n-3.23.1 Oslo i18n library
oslo.log-3.44.0 oslo.log library
oslo.privsep-1.33.1 OpenStack library for privilege separation
oslo.serialization-2.29.1 Oslo Serialization library
oslo.service-1.40.0 oslo.service library
oslo.utils-3.41.0 Oslo Utility library
oslosphinx-4.18.0 OpenStack Sphinx Extensions and Theme
oslotest-3.8.0 Oslo test framework
pandas-0.23.4 Powerful data structures for data analysis, time series, and statistics
pandocfilters-1.4.2 Utilities for writing pandoc filters in python
paramiko-2.4.1 SSH2 protocol library
parse-1.12.0 parse() is the opposite of format()
partd-1.0.0 Appendable key-value storage
path.py-12.0.1 A module wrapper for os.path
patsy-0.5.1 A Python package for describing statistical models and for building design matrices.
pauvre-0.1923 Tools for plotting Oxford Nanopore and other long-read data.
paycheck-1.0.2 A Python QuickCheck implementation
pbr-4.2.0 Python Build Reasonableness
pefile-2019.4.18 Python PE parsing module
pep517-0.5.0 Wrappers to build Python packages using PEP 517 hooks
persistent-4.5.0 Translucent persistent objects
pexpect-4.7.0 Pexpect allows easy control of interactive console applications.
pickleshare-0.7.5 Tiny ‘shelve’-like database with concurrency support
pifpaf-2.2.2 Suite of tools and fixtures to manage daemons for testing
pip-18.0 The PyPA recommended tool for installing Python packages.
pip-api-0.0.12 An unofficial, importable pip API
pip-shims-0.3.3 Compatibility shims for pip versions 8 thru current.
pipenv-2018.11.26 Python Development Workflow for Humans.
pipreqs-0.4.9 Pip requirements.txt generator based on imports in project
pkgconfig-1.5.1 Interface Python with pkg-config
pkginfo-1.5.0.1 Query metadatdata from sdists / bdists / installed packages.
plette-0.2.2 Structured Pipfile and Pipfile.lock models.
plotly-4.0.0 An open-source, interactive graphing library for Python
ply-3.11 Python Lex & Yacc
porechop 0.2.0
positional-1.2.1 Library to enforce positional or key-word arguments (deprecated/unmaintained)
presto-0.5.11 A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
pretend-1.0.9 A library for stubbing in Python
process-tests-2.0.2 Tools for testing processes
profilehooks-1.11.0 Decorators for profiling/timing/tracing individual functions
progressbar33-2.4 Text progress bar library for Python.
prompt_toolkit-2.0.9 Library for building powerful interactive command lines in Python
protobuf-3.9.0 Protocol Buffers
prov-1.5.3 A library for W3C Provenance Data Model supporting PROV-JSON, PROV-XML and PROV-O (RDF)
psutil-5.6.3 Cross-platform lib for process and system monitoring in Python.
psycopg2-2.8.3 psycopg2 - Python-PostgreSQL Database Adapter
ptyprocess-0.6.0 Run a subprocess in a pseudo terminal
pure-sasl-0.6.1 Pure Python client SASL implementation
purl-1.5 An immutable URL class for easy URL-building and manipulation
py2bit-0.3.0 A package for accessing 2bit files using lib2bit
pyArango-1.3.2 An easy to use python driver for ArangoDB with built-in validation
pyBigWig-0.3.17 A package for accessing bigWig files using libBigWig
pyOpenSSL-19.0.0 Python wrapper module around the OpenSSL library
py_expression_eval-0.3.4 Python Mathematical Expression Evaluator
pyarrow-0.14.1 Python library for Apache Arrow
pyasn1-0.4.4 ASN.1 types and codecs
pyblake2-1.1.2 BLAKE2 hash function extension module
pycares-3.0.0 Python interface for c-ares
pycodestyle-2.5.0 Python style guide checker
pycosat-0.6.3 bindings to picosat (a SAT solver)
pycparser-2.18 C parser in Python
pycrypto-2.6.1 Cryptographic modules for Python.
pycryptodome-3.8.2 Cryptographic library for Python
pycurl-7.43.0.3 PycURL – A Python Interface To The cURL library
pydicom-1.3.0 Pure python package for DICOM medical file reading and writing
pydocstyle-3.0.0 Python docstring style checker
pydocumentdb-2.3.3 Azure DocumentDB Python SDK
pydot-1.4.1 Python interface to Graphviz’s Dot
pyemd-0.5.1 A Python wrapper for Ofir Pele and Michael Werman’s implementation of the Earth Mover’s Distance.
pyensembl-1.7.5 Python interface to ensembl reference genome metadata
pyfaidx-0.5.5.2 pyfaidx: efficient pythonic random access to fasta subsequences
pyflakes-2.1.1 passive checker of Python programs
pygithub3-0.5.1 Python wrapper for the github v3 api
pyinotify-0.9.6 Linux filesystem events monitoring
pykerberos-1.2.1 High-level interface to Kerberos
pylint-2.3.1 python code static checker
pymongo-3.8.0 Python driver for MongoDB http://www.mongodb.org
pymssql-2.1.4 DB-API interface to Microsoft SQL Server for Python. (new Cython-based version)
pynast-1.2.2 The Python Nearest Alignment Space Termination tool
pyodbc-4.0.27 DB API Module for ODBC
pypandoc-1.4 Thin wrapper for pandoc.
pyparsing-2.2.0 Python parsing module
pyperclip-1.7.0 A cross-platform clipboard module for Python. (Only handles plain text for now.)
pyrsistent-0.15.4 Persistent/Functional/Immutable data structures
pyserial-3.4 Python Serial Port Extension
pytables 3.4.4
pytest-checkdocs-1.2.0 check the README when running tests
pytest-cov-2.7.1 Pytest plugin for measuring coverage.
pytest-flake8-1.0.4 pytest plugin to check FLAKE8 requirements
pytest-mock-1.10.4 Thin-wrapper around the mock package for easier use with py.test
python-Levenshtein-0.12.0 Python extension for computing string edit distances and similarities.
python-cinderclient-4.2.1 OpenStack Block Storage API Client Library
python-consul-1.1.0 Python client for Consul (http://www.consul.io/)
python-dateutil-2.7.3 Extensions to the standard Python datetime module
python-dotenv-0.10.3 Add .env support to your django/flask apps in development and deployments
python-editor-1.0.4 Programmatically open an editor, capture the result.
python-freezerclient-2.1.0 OpenStack Disaster Recovery API Client Library
python-glanceclient-2.16.0 OpenStack Image API Client Library
python-hostlist-1.18 Python module for hostlist handling
python-igraph-0.7.1.post6 High performance graph data structures and algorithms
python-json-logger-0.1.11 A python library adding a json log formatter
python-keystoneclient-3.20.0 Client Library for OpenStack Identity
python-neutronclient-6.12.0 CLI and Client Library for OpenStack Networking
python-novaclient-14.2.0 Client library for OpenStack Compute API
python-openstackclient-3.19.0 OpenStack Command-line Client
python-pam-1.8.4 Python PAM module using ctypes, py3/py2
python-snappy-0.5.4 Python library for the snappy compression library from Google
python-subunit-1.3.0 Python implementation of subunit test streaming protocol
python-swiftclient-3.8.0 OpenStack Object Storage API Client Library
pytoml-0.1.21 A parser for TOML-0.4.0
pytype-2019.7.30 Python type inferencer
pytz-2018.5 World timezone definitions, modern and historical
pyxdg-0.26 PyXDG contains implementations of freedesktop.org standards in python.
pyzmq-18.0.2 Python bindings for 0MQ
qrcode-6.1 QR Code image generator
qtconsole-4.5.2 Jupyter Qt console
rackspace-auth-openstack-1.3 Rackspace Auth Plugin for OpenStack Clients.
rackspace-novaclient-2.1 Metapackage to install python-novaclient and Rackspace extensions
rax_default_network_flags_python_novaclient_ext-0.4.0 Novaclient Extension for Instance Default Network Flags
rax_scheduled_images_python_novaclient_ext-0.3.1 Extends python-novaclient to use RAX-SI, the Rackspace Nova API Scheduled Images extension
rdflib-4.2.2 RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.
rdflib-jsonld-0.4.0 rdflib extension adding JSON-LD parser and serializer
readme_renderer-24.0 readme_renderer is a library for rendering “readme” descriptions for Warehouse
redis-3.3.5 Python client for Redis key-value store
regex-2019.06.08 Alternative regular expression module, to replace re.
reno-2.11.3 RElease NOtes manager
reportlab-3.5.23 The Reportlab Toolkit
repoze.lru-0.7 A tiny LRU cache implementation and decorator
repoze.sphinx.autointerface-0.8 Sphinx extension: auto-generates API docs from Zope interfaces
requests-2.19.1 Python HTTP for Humans.
requests-kerberos-0.12.0 A Kerberos authentication handler for python-requests
requests-mock-1.6.0 Mock out responses from the requests package
requests-oauthlib-1.2.0 OAuthlib authentication support for Requests.
requests-toolbelt-0.9.1 A utility belt for advanced users of python-requests
requestsexceptions-1.4.0 Import exceptions from potentially bundled packages in requests.
requirementslib-1.5.3 A tool for converting between pip-style and pipfile requirements.
restructuredtext-lint-1.3.0 reStructuredText linter
rethinkdb-2.4.2.post1 Python driver library for the RethinkDB database server.
retrying-1.3.3 Retrying
retype-17.12.0 re-apply types from .pyi stub files to your codebase
rfc3986-1.3.2 Validating URI References per RFC 3986
rfc3987-1.3.8 Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)
roman-3.2 Integer to Roman numerals converter
rope-0.14.0 a python refactoring library…
rsa-4.0 Pure-Python RSA implementation
ruamel.yaml-0.16.0 ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order
ruffus-2.8.1 Light-weight Python Computational Pipeline Management
s3fs-0.3.1 Convenient Filesystem interface over S3
scandir-1.10.0 scandir, a better directory iterator and faster os.walk()
scanpy-1.4.4 Single-Cell Analysis in Python.
scanpydoc-0.3.4 A series of Sphinx extensions to get easy to maintain, numpydoc style documentation.
schema-salad-4.5.20190621200723 Schema Annotations for Linked Avro Data (SALAD)
sci-0.1.5 a collection of convenience and wrapper functions supporting tasks frequently needed by scientists
scikit-bio-0.5.5 Data structures, algorithms and educational resources for bioinformatics.
scikit-build-0.10.0 Improved build system generator for Python C/C++/Fortran/Cython extensions
scikit-image-0.15.0 Image processing routines for SciPy
scikit-learn-0.21.3 A set of python modules for machine learning and data mining
scipy-1.1.0 SciPy: Scientific Library for Python
scvi-0.4.1 Single-cell Variational Inference
seaborn-0.9.0 seaborn: statistical data visualization
selenium-3.141.0 Python bindings for Selenium
serializable-0.1.1 Base class with serialization helpers for user-defined Python objects
setuptools-40.0.0 Easily download, build, install, upgrade, and uninstall Python packages
setuptools-git-1.2 Setuptools revision control system plugin for Git
shap-0.29.3 A unified approach to explain the output of any machine learning model.
shellescape-3.4.1 Shell escape a string to safely use it as a token in a shell command (backport of Python shlex.quote for Python versions 2.x & < 3.3)
shove-0.6.6 Generic dictionaryish object storage frontend
simplegeneric-0.8.1 Simple generic functions (similar to Python’s own len(), pickle.dump(), etc.)
simplejson-3.16.0 Simple, fast, extensible JSON encoder/decoder for Python
singledispatch-3.4.0.3 This library brings functools.singledispatch from Python 3.4 to Python 2.6-3.3.
six-1.11.0 Python 2 and 3 compatibility utilities
sklearn-0.0 A set of python modules for machine learning and data mining
slurm-pipeline-3.1.0 A Python class for scheduling SLURM jobs
slurmpy-0.0.7 submit jobs to slurm with python
smmap2-2.0.5 A pure Python implementation of a sliding window memory map manager
snakemake-5.5.4 Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files.
snowballstemmer-1.9.0 This package provides 26 stemmers for 25 languages generated from Snowball algorithms.
softlayer_messaging-1.0.3 SoftLayer Message Queue Client
sortedcollections-1.1.2 Python Sorted Collections
sortedcontainers-2.1.0 Sorted Containers – Sorted List, Sorted Dict, Sorted Set
soupsieve-1.9.2 A modern CSS selector implementation for Beautiful Soup.
sphinx-autodoc-typehints-1.7.0 Type hints (PEP 484) support for the Sphinx autodoc extension
sphinx-rtd-theme-0.4.3 Read the Docs theme for Sphinx
sphinx_rtd_theme-0.4.3 Read the Docs theme for Sphinx
sphinxcontrib-applehelp-1.0.1
sphinxcontrib-devhelp-1.0.1
sphinxcontrib-htmlhelp-1.0.2
sphinxcontrib-jsmath-1.0.1 A sphinx extension which renders display math in HTML via JavaScript
sphinxcontrib-qthelp-1.0.2
sphinxcontrib-serializinghtml-1.1.3
sphinxcontrib-websupport-1.1.2 Sphinx API for Web Apps
sphinxcontrib_github_alt-1.1 Link to GitHub issues, pull requests, commits and users from Sphinx docs.
sqlalchemy-migrate-0.12.0 Database schema migration for SQLAlchemy
sqlparse-0.3.0 Non-validating SQL parser
ssh-import-id-5.6 Authorize SSH public keys from trusted online identities
statsmodels-0.10.1 Statistical computations and models for Python
stdeb-0.8.5 Python to Debian source package conversion utility
stestr-2.4.0 A parallel Python test runner built around subunit
stevedore-1.30.1 Manage dynamic plugins for Python applications
strict-rfc3339-0.7 Strict, simple, lightweight RFC3339 functions
stuf-0.9.16 Normal, default, ordered, chained, restricted, counter, and frozen dictionaries with attribute-style access.
subunit2sql-1.10.0 Command to Read a subunit file or stream and put the data in a SQL DB
swiftly-2.06 Command line tool and client bindings for OpenStack Swift.
sybil-1.2.0 Automated testing for the examples in your documentation.
sympy-1.4 Computer algebra system (CAS) in Python
synapseclient-1.9.3 A client for Synapse, a collaborative compute space that allows scientists to share and analyze data together.
tabulate-0.8.2 Pretty-print tabular data
tabulator-1.23.0 Consistent interface for stream reading and writing tabular data (csv/xls/json/etc)
tblib-1.4.0 Traceback serialization library.
termcolor-1.1.0 ANSII Color formatting for output in terminal.
testfixtures-6.10.0 A collection of helpers and mock objects for unit tests and doc tests.
testpath-0.4.2 Test utilities for code working with files and commands
testrepository-0.0.20 A repository of test results.
testresources-2.0.1 Testresources, a pyunit extension for managing expensive test resources
testscenarios-0.5.0 Testscenarios, a pyunit extension for dependency injection
testtools-2.3.0 Extensions to the Python standard library unit testing framework
textblob-0.15.3 Simple, Pythonic text processing. Sentiment analysis, part-of-speech tagging, noun phrase parsing, and more.
tifffile-2019.7.26 Read and write TIFF(r) files
tinytimer-0.0.0 Tiny Python benchmarking library
tokenize-rt-3.2.0 A wrapper around the stdlib tokenize
which roundtrips.
toml-0.10.0 Python Library for Tom’s Obvious, Minimal Language
tomlkit-0.5.5 Style preserving TOML library
toolz-0.10.0 List processing tools and functional utilities
torch-1.2.0 Tensors and Dynamic neural networks in Python with strong GPU acceleration
torchfile-0.1.0 Torch7 binary serialized file parser
tqdm-4.32.2 Fast, Extensible Progress Meter
traitlets-4.3.2 Traitlets Python config system
treq-18.6.0 A requests-like API built on top of twisted.web’s Agent
twine-1.13.0 Collection of utilities for publishing packages on PyPI
twobitreader-3.1.7 A fast python package for reading .2bit files (used by the UCSC genome browser)
typechecks-0.1.0 Helper functions for runtime type checking
typed-ast-1.4.0 a fork of Python 2 and 3 ast modules with type comment support
typing-extensions-3.7.4 Backported and Experimental Type Hints for Python 3.5+
tzlocal-2.0.0 tzinfo object for the local timezone
ujson-1.35 Ultra fast JSON encoder and decoder for Python
umap-learn-0.3.9 Uniform Manifold Approximation and Projection
umi_tools-1.0.0 umi_tools: Tools for UMI analyses
unicodecsv-0.14.1 Python2’s stdlib csv module is nice, but it doesn’t support unicode. This module is a drop-in replacement which does .
uritemplate-3.0.0 URI templates
urllib3-1.23 HTTP library with thread-safe connection pooling, file post, and more.
urwid-2.0.1 A full-featured console (xterm et al.) user interface library
vctools-0.1.6.1 A set of tools for interacting with the VMware vCloud API, whether on vCloud Air or locally installed.
vega-2.5.0 IPyVega: An IPython/Jupyter widget for Vega 5 and Vega-Lite 3
vega3-0.13.0 Deprecated: please use vega
vine-1.3.0 Promises, promises, promises.
virtualenv-16.0.0 Virtual Python Environment builder
virtualenv-clone-0.5.3 script to clone virtualenvs.
visdom-0.1.8.8 A tool for visualizing live, rich data for Torch and Numpy
visitor-0.1.3 A tiny pythonic visitor implementation.
vistir-0.4.3 Miscellaneous utilities for dealing with filesystems, paths, projects, subprocesses, and more.
voluptuous-0.11.5 # Voluptuous is a Python data validation library
wadllib-1.3.3 Navigate HTTP resources using WADL files as guides.
warlock-1.3.3 Python object model built on JSON schema and JSON patch.
watchdog-0.9.0 Filesystem events monitoring
webcolors-1.9.1 A library for working with color names and color values formats defined by HTML and CSS.
webencodings-0.5.1 Character encoding aliases for legacy web content
websocket-0.2.1 Websocket implementation for gevent
whatshap-0.18 phase genomic variants using DNA sequencing reads
wheel-0.33.4 A built-package format for Python.
wrapt-1.11.2 Module for decorators, wrappers and monkey patching.
xattr-0.9.6 Python wrapper for extended filesystem attributes
xgboost-0.90 XGBoost Python Package
xlrd-1.1.0 Library for developers to extract data from Microsoft Excel (tm) spreadsheet files
xlwt-1.3.0 Library to create spreadsheet files compatible with MS Excel 97/2000/XP/2003 XLS files, on any platform, with Python 2.6, 2.7, 3.3+
xmlschema-1.0.13 An XML Schema validator and decoder
xopen-0.7.3 Open compressed files transparently
yagdspy-1.0 Graph dependancy system for processing tasks
yamlordereddictloader-0.4.0 YAML loader and dump for PyYAML allowing to keep keys order.
yappi-1.0 Yet Another Python Profiler
yarl-1.3.0 Yet another URL library
yaspin-0.14.3 Yet Another Terminal Spinner
zappy-0.2.0 Distributed processing with NumPy and Zarr.
zarr-2.3.2 An implementation of chunked, compressed, N-dimensional arrays for Python.
zict-1.0.0 Mutable mapping tools
zipp-0.5.2 Backport of pathlib-compatible object wrapper for zip files
zope.component-4.5 Zope Component Architecture
zope.configuration-4.3.1 Zope Configuration Markup Language (ZCML)
zope.copy-4.2 Pluggable object copying mechanism
zope.deferredimport-4.3.1 zope.deferredimport allows you to perform imports names that will only be resolved when used in the code.
zope.deprecation-4.4.0 Zope Deprecation Infrastructure
zope.event-4.4 Very basic event publishing system
zope.exceptions-4.3 Zope Exceptions
zope.hookable-4.2.0 Zope hookable
zope.i18nmessageid-4.3.1 Message Identifiers for internationalization
zope.interface-4.6.0 Interfaces for Python
zope.location-4.2 Zope Location
zope.proxy-4.3.2 Generic Transparent Proxies
zope.schema-4.9.3 zope.interface extension for defining data schemas
zope.security-4.3.1 Zope Security Framework
zope.testing-4.7 Zope testing helpers
zope.testrunner-5.0 Zope testrunner script.
zstandard-0.11.1 Zstandard bindings for Python
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