Package List
APScheduler-3.3.1 In-process task scheduler with Cron-like capabilities
Babel-2.4.0 Internationalization utilities
CacheControl-0.12.2 httplib2 caching for requests
ConfigArgParse-0.11.0 A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.
Cython-0.25.2 The Cython compiler for writing C extensions for the Python language.
Flask-0.12.1 A simple framework for building complex web applications.
Flask-Bootstrap-3.3.7.1 An extension that includes Bootstrap in your project, without any boilerplate code.
Flask-Cors-3.0.2 A Flask extension adding a decorator for CORS support
Flask-Debug-0.4.3 Shows reflection/configuration to aid the development of Flask applications.
Flask-Migrate-2.0.3 SQLAlchemy database migrations for Flask applications using Alembic
Flask-SQLAlchemy-2.2 Adds SQLAlchemy support to your Flask application
Flask-Script-2.0.5 Scripting support for Flask
Flask-WTF-0.14.2 Simple integration of Flask and WTForms.
GitPython-2.1.3 Python Git Library
HTSeq-0.7.2 A framework to process and analyze data from high-throughput sequencing (HTS) assays
HeapDict-1.0.0 a heap with decrease-key and increase-key operations
Jinja2-2.9.6 A small but fast and easy to use stand-alone template engine written in pure python.
Mako-1.0.6 A super-fast templating language that borrows the best ideas from the existing templating languages.
Markdown-2.6.8 Python implementation of Markdown.
MarkupSafe-1.0 Implements a XML/HTML/XHTML Markup safe string for Python
Nuitka-0.5.25 Python compiler with full language support and CPython compatibility
Pillow-4.1.0 Python Imaging Library (Fork)
PrettyTable-0.7.2 A simple Python library for easily displaying tabular data in a visually appealing ASCII table format.
PyClone 0.12.9
PyDP 0.2.2
PyGithub-1.34 Use the full Github API v3
PyGreSQL-5.0.3 Python PostgreSQL Interfaces
PyInstaller-3.2.1 PyInstaller bundles a Python application and all its dependencies into a single package.
PyMySQL-0.7.11 Pure Python MySQL Driver
PyQtX-0.1.2 Mimics the structure of PyQt5 but provides PyQt4 as a fallback solution.
PySide-1.2.1 Python bindings for the Qt cross-platform application and UI framework
PyVCF-0.6.8 Variant Call Format (VCF) parser for Python
PyYAML-3.12 YAML parser and emitter for Python
Pygments-2.2.0 Pygments is a syntax highlighting package written in Python.
SQLAlchemy-1.1.9 Database Abstraction Library
Sphinx-1.5.5 Python documentation generator
Theano-0.9.0 Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs.
WTForms-2.1 A flexible forms validation and rendering library for Python web development.
Werkzeug-0.12.1 The comprehensive WSGI web application library.
XlsxWriter-0.9.6 A Python module for creating Excel XLSX files.
abstract_rendering-0.5.1 Rendering as a binning process
aenum-2.0.6 Advanced Enumerations (compatible with Python’s stdlib Enum), NamedTuples, and NamedConstants
alabaster-0.7.10 A configurable sidebar-enabled Sphinx theme
alnvu-0.1.0 Reformat and condense multiple sequence alignments to highlight variability
anaconda-client-1.2.2 Anaconda Cloud command line client library
ansible-2.2.2.0 Radically simple IT automation
apiwrapper-0.1.8 Simple API Wrapper
appdirs-1.4.3 A small Python module for determining appropriate platform-specific dirs, e.g. a “user data dir”.
argcomplete-1.8.2 Bash tab completion for argparse
argh-0.26.2 An unobtrusive argparse wrapper with natural syntax
argparse-1.4.0 Python command-line parsing library
astroid-1.4.9 A abstract syntax tree for Python with inference support.
astropy-1.3.2 Community-developed python astronomy tools
asyncio-3.4.3 reference implementation of PEP 3156
autopep8-1.3.1 A tool that automatically formats Python code to conform to the PEP 8 style guide
awscli-1.11.76 Universal Command Line Environment for AWS.
backports.shutil-get-terminal-size-1.0.0 A backport of the get_terminal_size function from Python 3.3’s shutil.
bcbio-gff-0.6.4 Read and write Generic Feature Format (GFF) with Biopython integration.
beautifulsoup4-4.5.3 Screen-scraping library
biom-format-2.1.5 Biological Observation Matrix (BIOM) format
biopython-1.69 Freely available tools for computational molecular biology.
bitarray-0.8.1 efficient arrays of booleans – C extension
bitstring-3.1.5 Simple construction, analysis and modification of binary data.
blaze-0.10.1 Blaze
bleach-2.0.0 An easy safelist-based HTML-sanitizing tool.
blessings-1.6 A thin, practical wrapper around terminal coloring, styling, and positioning
blinker-1.4 Fast, simple object-to-object and broadcast signaling
blist-1.3.6 a list-like type with better asymptotic performance and similar performance on small lists
bokeh-0.12.5 Interactive plots and applications in the browser from Python
boto3-1.4.4 The AWS SDK for Python
botocore-1.5.39 Low-level, data-driven core of boto 3.
bpython-0.16 Fancy Interface to the Python Interpreter
burrito-0.9.1 Framework for wrapping and controlling command-line applications.
burrito-fillings-0.1.1 burrito-fillings: burrito application controllers for bioinformatics
bz2file-0.98 Read and write bzip2-compressed files.
certifi-2017.1.23 Python package for providing Mozilla’s CA Bundle.
cffi-1.10.0 Foreign Function Interface for Python calling C code.
chardet-3.0.1 Universal encoding detector for Python 2 and 3
click-6.7 A simple wrapper around optparse for powerful command line utilities.
cliff-2.5.0 Command Line Interface Formulation Framework
cloudpickle-0.2.2 Extended pickling support for Python objects
clyent-1.2.1 Command line client Library for windwos and posix
cmd2-0.7.0 cmd2 - a tool for building interactive command line applications in Python
colorama-0.3.7 Cross-platform colored terminal text.
configobj-5.0.6 Config file reading, writing and validation.
contextlib2-0.5.4 Backports and enhancements for the contextlib module
cryptography-1.8.1 cryptography is a package which provides cryptographic recipes and primitives to Python developers.
curtsies-0.2.11 Curses-like terminal wrapper, with colored strings!
cutadapt-1.13 trim adapters from high-throughput sequencing reads
cx_Freeze-5.0.1 create standalone executables from Python scripts
cycler-0.10.0 Composable style cycles
cytoolz-0.8.2 Cython implementation of Toolz: High performance functional utilities
daemonize-2.4.7 Library to enable your code run as a daemon process on Unix-like systems.
darkslide-2.3.3 Lightweight markup language-based html5 slideshow generator. Forked from Landslide.
dask-0.14.1 Parallel PyData with Task Scheduling
datacache-0.4.20 Helpers for transparently downloading datasets
datashape-0.5.2 A data description language.
dbf-0.96.8 Pure python package for reading/writing dBase, FoxPro, and Visual FoxPro .dbf files (including memos)
deap-1.0.2 Distributed Evolutionary Algorithms in Python
debtcollector-1.13.0 A collection of Python deprecation patterns and strategies that help you collect your technical debt in a non-destructive manner.
decorator-4.0.11 Better living through Python with decorators
deepTools-2.5.0.1 Useful tools for exploring deep sequencing data
deprecation-1.0 A library to handle automated deprecations
distributed-1.16.1 Distributed computing
dnspython-1.15.0 A DNS toolkit for Python
docutils-0.13.1 Docutils – Python Documentation Utilities
dominate-2.3.1 Dominate is a Python library for creating and manipulating HTML documents using an elegant DOM API.
drmaa-0.7.7 a python DRMAA library
easygui-0.98.1 EasyGUI is a module for very simple, very easy GUI programming in Python. EasyGUI is different from other GUI generators in that EasyGUI is NOT event-driven. Instead, all GUI interactions are invoked by simple function calls.
ecdsa-0.13 ECDSA cryptographic signature library (pure python)
enum34-1.1.6 Python 3.4 Enum backported to 3.3, 3.2, 3.1, 2.7, 2.6, 2.5, and 2.4
epydoc-3.0.1 Edward Loper’s API Documentation Generation Tool
et_xmlfile-1.0.1 An implementation of lxml.xmlfile for the standard library
fastcache-1.0.2 C implementation of Python 3 functools.lru_cache
fasteners-0.14.1 A python package that provides useful locks.
flask-appconfig-0.11.1 Configures Flask applications in a canonical way. Also auto-configures Heroku. Aims to standardize configuration.
flask-nav-0.6 Easily create navigation for Flask applications.
freezer-4.0.0 The OpenStack Backup Restore and Disaster Recovery as a Service Platform
funcsigs-1.0.2 Python function signatures from PEP362 for Python 2.6, 2.7 and 3.2+
future-0.16.0 Clean single-source support for Python 3 and 2
gitdb2-2.0.0 Git Object Database
google-1.9.3 Python bindings to the Google search engine.
greenlet-0.4.12 Lightweight in-process concurrent programming
gtfparse-0.0.6 GTF Parsing
h5py-2.7.0 Read and write HDF5 files from Python
html5lib-0.999999999 HTML parser based on the WHATWG HTML specification
httplib2-0.10.3 A comprehensive HTTP client library.
idna-2.5 Internationalized Domain Names in Applications (IDNA)
imagesize-0.7.1 Getting image size from png/jpeg/jpeg2000/gif file
inflection-0.3.1 A port of Ruby on Rails inflector to Python
ip_associations_python_novaclient_ext-0.2 Adds Rackspace ip_associations support to python-novaclient
ipaddress-1.0.18 IPv4/IPv6 manipulation library
ipdb-0.10.2 IPython-enabled pdb
iso8601-0.1.11 Simple module to parse ISO 8601 dates
isort-4.2.5 A Python utility / library to sort Python imports.
itsdangerous-0.24 Various helpers to pass trusted data to untrusted environments and back.
jdcal-1.3 Julian dates from proleptic Gregorian and Julian calendars.
jedi-0.10.2 An autocompletion tool for Python that can be used for text editors.
jellyfish-0.5.6 a library for doing approximate and phonetic matching of strings.
jmespath-0.9.2 JSON Matching Expressions
json2html-1.1.1 JSON to HTML Table Representation
jsonpatch-1.15 Apply JSON-Patches (RFC 6902)
jsonpointer-1.10 Identify specific nodes in a JSON document (RFC 6901)
jsonschema-2.6.0 An implementation of JSON Schema validation for Python
jupyter_client-5.0.1 Jupyter protocol implementation and client libraries
jupyter_console-5.1.0 Jupyter terminal console
jupyter_core-4.3.0 Jupyter core package. A base package on which Jupyter projects rely.
keyring-10.3.2 Store and access your passwords safely.
keystoneauth1-2.19.0 Authentication Library for OpenStack Identity
kivy-1.9.1 A software library for rapid development of hardware-accelerated multitouch applications.
kivy-garden-0.1.4 Garden tool for kivy flowers.
lazr.uri-1.0.3 A self-contained, easily reusable library for parsing, manipulating,
lazy-object-proxy-1.2.2 A fast and thorough lazy object proxy.
ldap3-2.2.2 A strictly RFC 4510 conforming LDAP V3 pure Python client library
liac-arff-2.1.0 A module for read and write ARFF files in Python.
locket-0.2.0 File-based locks for Python for Linux and Windows
lockfile-0.12.2 Platform-independent file locking module
logilab-common-1.4.0 collection of low-level Python packages and modules used by Logilab projects
lxml-3.7.3 Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API.
matplotlib-2.0.0 Python plotting package
mccabe-0.6.1 McCabe checker, plugin for flake8
memoized-property-1.0.3 A simple python decorator for defining properties that only run their fget function once
messytables-0.15.2 Parse messy tabular data in various formats
misopy-0.5.3 Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq
mistune-0.7.4 The fastest markdown parser in pure Python
mock-2.0.0 Rolling backport of unittest.mock for all Pythons
monotonic-1.3 An implementation of time.monotonic() for Python 2 & < 3.3
moves-0.1 Moves Client API
mpi4py-2.0.0 Python bindings for MPI
mpmath-0.19 Python library for arbitrary-precision floating-point arithmetic
msgpack-python-0.4.8 MessagePack (de)serializer.
multipledispatch-0.4.9 Multiple dispatch
natsort-5.0.2 Simple yet flexible natural sorting in Python.
ndg-httpsclient-0.4.2 Provides enhanced HTTPS support for httplib and urllib2 using PyOpenSSL
netCDF4-1.2.7 Provides an object-oriented python interface to the netCDF version 4 library.
netaddr-0.7.19 A network address manipulation library for Python
netifaces-0.10.5 Portable network interface information.
networkx-1.11 Python package for creating and manipulating graphs and networks
nltk-3.2.2 Natural Language Toolkit
nose-1.3.7 nose extends unittest to make testing easier
novaclient-auth-secretkey-0.1 Authentication plugin for novaclient enabling API key and secret key
npyscreen-4.10.5 Writing user interfaces without all that ugly mucking about in hyperspace
numexpr-2.6.2 Fast numerical expression evaluator for NumPy
numpy-1.12.1 NumPy: array processing for numbers, strings, records, and objects.
numpydoc-0.6.0 Sphinx extension to support docstrings in Numpy format
oauth-1.0.1 Library for OAuth version 1.0a.
odo-0.5.0 Data migration utilities
olefile-0.44 Python package to parse, read and write Microsoft OLE2 files (Structured Storage or Compound Document, Microsoft Office) - Improved version of the OleFileIO module from PIL, the Python Image Library.
openpyxl-2.4.5 A Python library to read/write Excel 2010 xlsx/xlsm files
openstacksdk-0.9.14 An SDK for building applications to work with OpenStack
os-client-config-1.26.0 OpenStack Client Configuation Library
os_diskconfig_python_novaclient_ext-0.1.3 Disk Config extension for python-novaclient
os_networksv2_python_novaclient_ext-0.26 Adds rackspace networks support to python-novaclient
os_virtual_interfacesv2_python_novaclient_ext-0.20 Adds Virtual Interfaces support to python-novaclient
osc-lib-1.3.0 OpenStackClient Library
oslo.concurrency-3.20.0 Oslo Concurrency library
oslo.config-3.24.0 Oslo Configuration API
oslo.context-2.13.0 Oslo Context library
oslo.i18n-3.15.0 Oslo i18n library
oslo.log-3.24.0 oslo.log library
oslo.serialization-2.18.0 Oslo Serialization library
oslo.utils-3.25.0 Oslo Utility library
packaging-16.8 Core utilities for Python packages
pandas-0.19.2 Powerful data structures for data analysis, time series, and statistics
pandocfilters-1.4.1 Utilities for writing pandoc filters in python
paramiko-2.1.2 SSH2 protocol library
parse-1.8.0 parse() is the opposite of format()
path.py-10.1 A module wrapper for os.path
pathlib2-2.2.1 Object-oriented filesystem paths
pathtools-0.1.2 File system general utilities
patsy-0.4.1 A Python package for describing statistical models and for building design matrices.
paycheck-1.0.2 A Python QuickCheck implementation
pbr-2.1.0 Python Build Reasonableness
pep8-1.7.0 Python style guide checker
pexpect-4.2.1 Pexpect allows easy control of interactive console applications.
pickleshare-0.7.4 Tiny ‘shelve’-like database with concurrency support
pip-9.0.1 The PyPA recommended tool for installing Python packages.
ply-3.10 Python Lex & Yacc
positional-1.1.1 Library to enforce positional or key-word arguments (deprecated/unmaintained)
post-0.0.12 http POST dict
progressbar33-2.4 Text progress bar library for Python.
prompt_toolkit-1.0.14 Library for building powerful interactive command lines in Python
protobuf-3.2.0 Protocol Buffers
psutil-5.2.2 Cross-platform lib for process and system monitoring in Python.
psycopg2-2.7.1 psycopg2 - Python-PostgreSQL Database Adapter
ptyprocess-0.5.1 Run a subprocess in a pseudo terminal
py-1.4.32 library with cross-python path, ini-parsing, io, code, log facilities
py2bit-0.2.1 A package for accessing 2bit files using lib2bit
pyBigWig-0.3.4 A package for accessing bigWig files using libBigWig
pyOpenSSL-16.2.0 Python wrapper module around the OpenSSL library
pyasn1-0.2.3 ASN.1 types and codecs
pycosat-0.6.1 bindings to picosat (a SAT solver)
pycparser-2.17 C parser in Python
pycrypto-2.6.1 Cryptographic modules for Python.
pycurl-7.43.0 PycURL – A Python Interface To The cURL library
pyensembl-1.1.0 Python interface to ensembl reference genome metadata
pyflakes-1.5.0 passive checker of Python programs
pygithub3-0.5.1 Python wrapper for the github v3 api
pyinotify-0.9.6 Linux filesystem events monitoring
pylint-1.6.5 python code static checker
pymongo-3.4.0 Python driver for MongoDB http://www.mongodb.org
pymssql-2.1.3 DB-API interface to Microsoft SQL Server for Python. (new Cython-based version)
pynast-1.2.2 The Python Nearest Alignment Space Termination tool
pyodbc-4.0.16 DB API Module for ODBC
pypandoc-1.3.3 Thin wrapper for pandoc.
pyparsing-2.2.0 Python parsing module
pysam-0.10.0 pysam
pyserial-3.3 Python Serial Port Extension
pytest-3.0.7 pytest: simple powerful testing with Python
python-cinderclient-2.0.1 OpenStack Block Storage API Client Library
python-dateutil-2.6.0 Extensions to the standard Python datetime module
python-debian-0.1.28 Debian package related modules
python-editor-1.0.3 Programmatically open an editor, capture the result.
python-freezerclient-1.3.0 OpenStack Disaster Recovery API Client Library
python-glanceclient-2.6.0 OpenStack Image API Client Library
python-hostlist-1.17 Python module for hostlist handling
python-keystoneclient-3.10.0 Client Library for OpenStack Identity
python-novaclient-8.0.0 Client library for OpenStack Compute API
python-openstackclient-3.9.0 OpenStack Command-line Client
python-pam-1.8.2 Python PAM module using ctypes, py3/py2
python-swiftclient-3.3.0 OpenStack Object Storage API Client Library
pytz-2017.2 World timezone definitions, modern and historical
pyxdg-0.25 PyXDG contains implementations of freedesktop.org standards in python.
pyzmq-16.0.2 Python bindings for 0MQ
qrcode-5.3 QR Code image generator
rackspace-novaclient-2.1 Metapackage to install python-novaclient and Rackspace extensions
redis-2.10.5 Python client for Redis key-value store
reportlab-3.4.0 The Reportlab Toolkit
requests-2.13.0 Python HTTP for Humans.
requestsexceptions-1.2.0 Import exceptions from potentially bundled packages in requests.
rfc3986-0.4.1 Validating URI References per RFC 3986
rmtree-1.0 A sweet and simple python wrapper to shutil.rmtree
roman-2.0.0 Integer to Roman numerals converter
rsa-3.4.2 Pure-Python RSA implementation
ruffus-2.6.3 Light-weight Python Computational Pipeline Management
s3fs-0.0.9 Convenient Filesystem interface over S3
s3transfer-0.1.10 An Amazon S3 Transfer Manager
scandir-1.5 scandir, a better directory iterator and faster os.walk()
scikit-bio-0.5.1 Data structures, algorithms and educational resources for bioinformatics.
scikit-image-0.12.3 Image processing routines for SciPy
scikit-learn-0.18.1 A set of python modules for machine learning and data mining
scipy-0.19.0 SciPy: Scientific Library for Python
serializable-0.1.1 Base class with serialization helpers for user-defined Python objects
setuptools-34.4.1 Easily download, build, install, upgrade, and uninstall Python packages
shove-0.6.6 Generic dictionaryish object storage frontend
simplegeneric-0.8.1 Simple generic functions (similar to Python’s own len(), pickle.dump(), etc.)
simplejson-3.10.0 Simple, fast, extensible JSON encoder/decoder for Python
singledispatch-3.4.0.3 This library brings functools.singledispatch from Python 3.4 to Python 2.6-3.3.
six-1.10.0 Python 2 and 3 compatibility utilities
slurm-pipeline-1.1.1 A Python class for scheduling SLURM jobs
smmap2-2.0.1 A pure python implementation of a sliding window memory map manager
snowballstemmer-1.2.1 This package provides 16 stemmer algorithms (15 + Poerter English stemmer) generated from Snowball algorithms.
sockjs-tornado-1.0.3 SockJS python server implementation on top of Tornado framework
sortedcollections-0.5.3 Python Sorted Collections
sortedcontainers-1.5.7 Sorted Containers – Sorted List, Sorted Dict, Sorted Set
spyder-3.1.3 Scientific PYthon Development EnviRonment
ssh-import-id-5.6 Authorize SSH public keys from trusted online identities
statsmodels-0.8.0rc1 Statistical computations and models for Python
stdeb-0.8.5 Python to Debian source package conversion utility
stevedore-1.21.0 Manage dynamic plugins for Python applications
stuf-0.9.16 Normal, default, ordered, chained, restricted, counter, and frozen dictionaries with attribute-style access.
swiftly-2.06 Command line tool and client bindings for OpenStack Swift.
sympy-1.0 Computer algebra system (CAS) in Python
tblib-1.3.2 Traceback serialization library.
terminado-0.6 Terminals served to xterm.js using Tornado websockets
tinytimer-0.0.0 Tiny Python benchmarking library
toil-3.7.0a1.dev386 Pipeline management software for clusters.
toolz-0.8.2 List processing tools and functional utilities
tornado-4.5b2 Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed.
traitlets-4.3.2 Traitlets Python config system
twobitreader-3.1.4 A fast python package for reading .2bit files (used by the UCSC genome browser)
typechecks-0.0.2 Helper functions for runtime type checking
tzlocal-1.3 tzinfo object for the local timezone
ujson-1.35 Ultra fast JSON encoder and decoder for Python
unicodecsv-0.14.1 Python2’s stdlib csv module is nice, but it doesn’t support unicode. This module is a drop-in replacement which does .
uritemplate-3.0.0 URI templates
urllib 1.21.1
urwid-1.3.1 A full-featured console (xterm et al.) user interface library
utils-0.9.0 Python Distribution Utilities
vctools-0.1.6.1 A set of tools for interacting with the VMware vCloud API, whether on vCloud Air or locally installed.
virtualenv-15.1.0 Virtual Python Environment builder
visitor-0.1.3 A tiny pythonic visitor implementation.
wadllib-1.3.2 Navigate HTTP resources using WADL files as guides.
warlock-1.3.0 Python object model built on JSON schema and JSON patch.
watchdog-0.8.3 Filesystem events monitoring
wcwidth-0.1.7 Measures number of Terminal column cells of wide-character codes
webencodings-0.5.1 Character encoding aliases for legacy web content
wheel-0.30.0a0 A built-package format for Python.
wrapt-1.10.10 Module for decorators, wrappers and monkey patching.
xlrd-1.0.0 Library for developers to extract data from Microsoft Excel (tm) spreadsheet files
xopen-0.1.1 Open compressed files transparently
zict-0.1.1 Mutable mapping tools
zmq-0.0.0 You are probably looking for pyzmq.
zope.interface-4.3.3 Interfaces for Python
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